PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50747.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 734aa    MW: 85545.3 Da    PI: 8.0045
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50747.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1591.5e-1830123190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY  YA  +GF++r  ++++  r+g+ +++  vCs+egk +++kk+       e+ +r++++  +gCka++k+k   +g  +++++++eHnHel+
  Dca50747.1  30 SFYGIYAVAIGFDIRLYTQHRW-RDGTLMDKLIVCSREGKYTPRKKTesmnnsVENVERKTNVRAIGCKARIKLKCI-KGILKIDQFVEEHNHELV 123
                 59***************99998.8888******************99999887667777888999***********9.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1430123IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28245337IPR018289MULE transposase domain
PROSITE profilePS509669.545527563IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012538565IPR006564Zinc finger, PMZ-type
PfamPF044341.8E-4539558IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MNEGILCETV EEDFKPYVGQ EFVSVKEAAS FYGIYAVAIG FDIRLYTQHR WRDGTLMDKL  60
IVCSREGKYT PRKKTESMNN SVENVERKTN VRAIGCKARI KLKCIKGILK IDQFVEEHNH  120
ELVSVENREF QKLCTSLTDY HKSFIMSNIR LNIGATKTYR MLKEHSNGFQ NIGATLNHFK  180
NFQRDIKCFI HDRDGQLFID RLKSMEENCP GFFFDYDVDE EGCLRRAIWA DRIAIRNYEL  240
FGDAVTFDPT YSTNKYSMVF TPFTGVDNHK KSVTFCGALI AKEDFESFNW VFRRFLTAMG  300
GKEPYYIITD QDPGIIKSVS HIFRRSRHRF CTWHIMNKVA VKYGATNNDY REFLSKLNSI  360
VWDKEIEEAE FDIRWKEIMN EHGVGEGDWF EDCFCIRNQW VQAHCRDLRM GALLRTTQRS  420
ESTNSFFKKF EHKSGTLVEF WLRFESAMEQ QRHSKKKSDN DDQQSTPKCQ THLKIEEYAS  480
KVYTHQVFKD VQEEIILSVG KCRCTGYKEE NEEQISSVED AVRGRVFDVH YHPGTFNVRC  540
SCRLYERLGI LCRHIIWIYT GHAVEEIPKM FVSRRWMKDS VCDVGESMKG LCWSGKGDGR  600
QAEMTKLWTE INETVAFLES GDLETVKQMC DSLRKFREDH KSSEVKVTKE QEFEKLLGCK  660
VSSEISIMPP KKSKNKGSGK RMLSTKSVAV AESSKAKRLC NNCKQMAHHD KRNCPNPFVE  720
RASIRSESAD EHEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-77FAR1-related sequence 5